Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916436.1_cds_XP_016466146.1_59028
CDS Infomation

[gene=LOC107788919] [db_xref=GeneID:107788919] [protein=endo-1,4-beta-xylanase A-like isoform X2] [protein_id=XP_016466146.1] [location=complement(join(6823..7167,7585..7961,8124..8529,8623..8721,9151..9320,9419..9635,9766..9815,10492..10546))] [gbkey=CDS]
Sequence

ATGGCTACACTTGAAAATAATGGATTTCTTCTTTGCTGCTGCTTGTTTTTGGCAGGATAT
TTGGTTCATGGTGCTACACCTTACGACTATTCTGCAACAATAGAGTGCCTCAACCAACCA
TTGGATCCTCAATATGGAGGAGGTTTAATTGCAAATCCTAGTTTTGACAAGGGCGTAGAA
GCATGGAAAGTAGATGGTCATGTCAAAATTGAAGCAAGGGAATCTGGTGGAAACAAATTT
ATTGTGGCTTATAATAGAACAACTCCCTTTAGTATCTCACAATCTTTTTACTTGAAGGAA
GGGGTATTTTACACCTTTTCAGCTTGGGTTCAGTTAAGTGAAGGATCGGATATTGTGGTT
GCCATGATTTACAACTCAGTCGAAAATACTGTTCATGTTGTGGGATCAGTAATAGCTAAA
TCTGGATGTTGGTCTATGATCAAAGGTGGTCTTACTGTTGATCAAAATGCACCTTCAGTA
CTCCATTTTCAGTGCAACAACACCAAGTCCGAGTTAAGGGTTGACAGTGTTTCTCTGAAG
GAATTCAACAAACATGAGTGGCAGGAAAATCGGTTGAGAAACATAGAGAAGGTTCGGAAA
AGAACGTTGAGAGTAAATGTAGCAAACAAGAATGGCAAGAAGATTAAAGGAGCAAAAATC
AAGATTCAACAGAAAAAACTTCAATTTGTTATTGGCTGCGCAACACCATCTTCCATTTTA
ATGTCCAAATCCTATCAAGAATGGTTCGTGTCCAGGTTTACAACAACAGTTTTCGATAAC
GAGATGAAATGGTACTATACCGAAAGGTTACAAGGCCACGAAAATTACACAACCCCAGAT
GCAATGCTCAAGTTCTTTATTGATCATGGGATTGATGTAAGAGGACATAACATCCTATGG
GGAGCAGCTACCCAACGTTGGGTACGAGACTTACCTCCAAGACAACTTTTAAGTGAATCT
GTACGACGAATGGGTAGCGTTATGTCAAGATATGCAGGTAAATTGGTTGCTTGGGATGTT
GTAAATGAGAATTTACATCACCCACTTTTTGAGGAAAAGCTGGGGAAAAATGCTTCAGCC
ATCTTTTACAAGATTGCAAGTTCACTAGACACTAAAGCCACGATGTTCTTGAATGAGTTT
AATACTTTAGAGCATCCAGCTGATATGGTCTCTATTCCATCAAAATATGTTGAAAAGCTT
CAGGAGATTAAGGCATTTCCAGGGAATGAGGAGTTGGTTATTGGAATTGGACTTCAAGGA
CACTTTGATCCTCATCCTAATATACCATATATTCGTGCAGTCTTTGATGTTTTAGGAGAA
ACTAAAATGCCCATTTGGCTCACCGAGTTAAATGTTGAGCCCTGTCCAAAACAGGCATAT
TTTTTGGAAGAAATAATGAGGGAAGCATTTGCACATCCTGGTGTTAAAGGGATGATGATA
TGGATAGGATGGAGTCCAAATGGATGCCATGAAATGTGTTTAGTAGACAGCAAACTCCAG
AATTCGCCATCAGGGGATGTGGTTGACAAGCTTCTTGCTGAATGGAAGACAACAAACTTA
AACGGAGTTACAGACAATGGAGGAGCTTTTGAGGTTAAGGTTTTTCATGGAGATTATTAC
GTCACAGTTTATAATCCTAAAACTGGTGCCAATGTCACAAGGGAAGTGCAGGTCTATGAT
GACAAGTCTGAAACAGTAGATGTTTCCATTACTCTGTGA

Peptide Sequence

PEP ID

XP_016466146.1
PEP Infomation

PREDICTED: endo-1,4-beta-xylanase A-like isoform X2 [Nicotiana tabacum]
Sequence

MATLENNGFLLCCCLFLAGYLVHGATPYDYSATIECLNQPLDPQYGGGLIANPSFDKGVE
AWKVDGHVKIEARESGGNKFIVAYNRTTPFSISQSFYLKEGVFYTFSAWVQLSEGSDIVV
AMIYNSVENTVHVVGSVIAKSGCWSMIKGGLTVDQNAPSVLHFQCNNTKSELRVDSVSLK
EFNKHEWQENRLRNIEKVRKRTLRVNVANKNGKKIKGAKIKIQQKKLQFVIGCATPSSIL
MSKSYQEWFVSRFTTTVFDNEMKWYYTERLQGHENYTTPDAMLKFFIDHGIDVRGHNILW
GAATQRWVRDLPPRQLLSESVRRMGSVMSRYAGKLVAWDVVNENLHHPLFEEKLGKNASA
IFYKIASSLDTKATMFLNEFNTLEHPADMVSIPSKYVEKLQEIKAFPGNEELVIGIGLQG
HFDPHPNIPYIRAVFDVLGETKMPIWLTELNVEPCPKQAYFLEEIMREAFAHPGVKGMMI
WIGWSPNGCHEMCLVDSKLQNSPSGDVVDKLLAEWKTTNLNGVTDNGGAFEVKVFHGDYY
VTVYNPKTGANVTREVQVYDDKSETVDVSITL

Transcript Sequence

Gene sequence data has not been registered.